search()## [1] ".GlobalEnv" "package:gplots" "package:WriteXLS"
## [4] "package:edgeR" "package:limma" "package:cluster"
## [7] "package:e1071" "package:Biostrings" "package:XVector"
## [10] "package:IRanges" "package:S4Vectors" "package:stats4"
## [13] "package:BiocGenerics" "package:parallel" "package:seqinr"
## [16] "package:ape" "package:vioplot" "package:sm"
## [19] "package:stats" "package:graphics" "package:grDevices"
## [22] "package:utils" "package:datasets" "package:methods"
## [25] "Autoloads" "package:base".libPaths()## [1] "/home/uwe/R/i686-pc-linux-gnu-library/3.4"
## [2] "/usr/local/lib/R/site-library"
## [3] "/usr/lib/R/site-library"
## [4] "/usr/lib/R/library"installed.packages()## Package
## ade4 "ade4"
## adegenet "adegenet"
## akima "akima"
## ape "ape"
## assertthat "assertthat"
## backports "backports"
## base64enc "base64enc"
## BH "BH"
## bibtex "bibtex"
## bindr "bindr"
## bindrcpp "bindrcpp"
## BiocGenerics "BiocGenerics"
## BiocInstaller "BiocInstaller"
## Biostrings "Biostrings"
## bitops "bitops"
## brew "brew"
## broom "broom"
## callr "callr"
## car "car"
## caTools "caTools"
## CCP "CCP"
## cellranger "cellranger"
## cli "cli"
## clipr "clipr"
## coda "coda"
## commonmark "commonmark"
## cowplot "cowplot"
## crayon "crayon"
## crosstalk "crosstalk"
## curl "curl"
## data.table "data.table"
## DBI "DBI"
## dbplyr "dbplyr"
## deldir "deldir"
## desc "desc"
## devtools "devtools"
## doParallel "doParallel"
## dplyr "dplyr"
## DT "DT"
## e1071 "e1071"
## edgeR "edgeR"
## ellipse "ellipse"
## EMT "EMT"
## evaluate "evaluate"
## expm "expm"
## FactoMineR "FactoMineR"
## fastmatch "fastmatch"
## flashClust "flashClust"
## forcats "forcats"
## foreach "foreach"
## futile.logger "futile.logger"
## futile.options "futile.options"
## gdata "gdata"
## gdsfmt "gdsfmt"
## ggplot2 "ggplot2"
## ggvis "ggvis"
## git2r "git2r"
## glue "glue"
## gmodels "gmodels"
## gplots "gplots"
## gridBase "gridBase"
## gridExtra "gridExtra"
## gtools "gtools"
## haven "haven"
## hexbin "hexbin"
## highr "highr"
## hms "hms"
## htmltools "htmltools"
## htmlwidgets "htmlwidgets"
## httpuv "httpuv"
## httr "httr"
## hunspell "hunspell"
## igraph "igraph"
## IRanges "IRanges"
## irlba "irlba"
## iterators "iterators"
## jsonlite "jsonlite"
## knitr "knitr"
## lambda.r "lambda.r"
## lazyeval "lazyeval"
## leaflet "leaflet"
## leaps "leaps"
## LearnBayes "LearnBayes"
## limma "limma"
## lme4 "lme4"
## lmtest "lmtest"
## loa "loa"
## locfit "locfit"
## lubridate "lubridate"
## magrittr "magrittr"
## maptools "maptools"
## markdown "markdown"
## MatrixModels "MatrixModels"
## memoise "memoise"
## mime "mime"
## minqa "minqa"
## mnormt "mnormt"
## modelr "modelr"
## myp "myp"
## nloptr "nloptr"
## NMF "NMF"
## nortest "nortest"
## openssl "openssl"
## packrat "packrat"
## pbkrtest "pbkrtest"
## PBSmapping "PBSmapping"
## pegas "pegas"
## permute "permute"
## phangorn "phangorn"
## pkgconfig "pkgconfig"
## pkgmaker "pkgmaker"
## PKI "PKI"
## plogr "plogr"
## plyr "plyr"
## png "png"
## polysat "polysat"
## poppr "poppr"
## poweRlaw "poweRlaw"
## praise "praise"
## psych "psych"
## purrr "purrr"
## pvclust "pvclust"
## quadprog "quadprog"
## quantreg "quantreg"
## R6 "R6"
## raster "raster"
## Rcpp "Rcpp"
## RcppEigen "RcppEigen"
## RCurl "RCurl"
## readr "readr"
## readxl "readxl"
## registry "registry"
## rematch "rematch"
## reprex "reprex"
## rex "rex"
## RgoogleMaps "RgoogleMaps"
## rJava "rJava"
## RJSONIO "RJSONIO"
## rlang "rlang"
## rmarkdown "rmarkdown"
## RMThreshold "RMThreshold"
## rngtools "rngtools"
## rprojroot "rprojroot"
## rsconnect "rsconnect"
## rstudioapi "rstudioapi"
## rvest "rvest"
## S4Vectors "S4Vectors"
## scales "scales"
## scatterplot3d "scatterplot3d"
## segmented "segmented"
## selectr "selectr"
## seqinr "seqinr"
## shiny "shiny"
## shinythemes "shinythemes"
## sm "sm"
## SNPRelate "SNPRelate"
## snpStats "snpStats"
## sourcetools "sourcetools"
## sp "sp"
## SparseM "SparseM"
## spdep "spdep"
## splancs "splancs"
## stringdist "stringdist"
## stringi "stringi"
## stringr "stringr"
## testthat "testthat"
## tibble "tibble"
## tidyr "tidyr"
## tidyselect "tidyselect"
## tidyverse "tidyverse"
## tripack "tripack"
## tufte "tufte"
## vcd "vcd"
## vegan "vegan"
## VennDiagram "VennDiagram"
## VGAM "VGAM"
## vioplot "vioplot"
## viridis "viridis"
## viridisLite "viridisLite"
## whisker "whisker"
## withr "withr"
## WriteXLS "WriteXLS"
## XML "XML"
## xml2 "xml2"
## xtable "xtable"
## XVector "XVector"
## yaml "yaml"
## zlibbioc "zlibbioc"
## zoo "zoo"
## abind "abind"
## colorspace "colorspace"
## crayon "crayon"
## dichromat "dichromat"
## digest "digest"
## doMC "doMC"
## foreach "foreach"
## ggplot2 "ggplot2"
## gtable "gtable"
## iterators "iterators"
## labeling "labeling"
## littler "littler"
## magrittr "magrittr"
## mapproj "mapproj"
## maps "maps"
## memoise "memoise"
## multicore "multicore"
## munsell "munsell"
## pkgKitten "pkgKitten"
## plyr "plyr"
## proto "proto"
## RColorBrewer "RColorBrewer"
## Rcpp "Rcpp"
## reshape2 "reshape2"
## rkward "rkward"
## rkwardtests "rkwardtests"
## scales "scales"
## sp "sp"
## stringi "stringi"
## stringr "stringr"
## base "base"
## boot "boot"
## class "class"
## cluster "cluster"
## codetools "codetools"
## compiler "compiler"
## datasets "datasets"
## foreign "foreign"
## graphics "graphics"
## grDevices "grDevices"
## grid "grid"
## KernSmooth "KernSmooth"
## lattice "lattice"
## MASS "MASS"
## Matrix "Matrix"
## methods "methods"
## mgcv "mgcv"
## nlme "nlme"
## nnet "nnet"
## parallel "parallel"
## rpart "rpart"
## spatial "spatial"
## splines "splines"
## stats "stats"
## stats4 "stats4"
## survival "survival"
## tcltk "tcltk"
## tools "tools"
## utils "utils"
## LibPath Version
## ade4 "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.7-8"
## adegenet "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.0.1"
## akima "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.6-2"
## ape "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "5.0"
## assertthat "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.2.0"
## backports "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.1"
## base64enc "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1-3"
## BH "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.65.0-1"
## bibtex "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.4.0"
## bindr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1"
## bindrcpp "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.2"
## BiocGenerics "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.24.0"
## BiocInstaller "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.28.0"
## Biostrings "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.46.0"
## bitops "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0-6"
## brew "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0-6"
## broom "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.4.2"
## callr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.0"
## car "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.1-5"
## caTools "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.17.1"
## CCP "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1"
## cellranger "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.0"
## cli "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.0"
## clipr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.4.0"
## coda "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.19-1"
## commonmark "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.4"
## cowplot "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.8.0"
## crayon "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.3.4"
## crosstalk "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.0"
## curl "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "3.0"
## data.table "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.10.4-3"
## DBI "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.7"
## dbplyr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.0"
## deldir "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1-14"
## desc "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.1"
## devtools "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.13.3"
## doParallel "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.11"
## dplyr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.7.4"
## DT "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.2"
## e1071 "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.6-8"
## edgeR "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "3.20.1"
## ellipse "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.3-8"
## EMT "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1"
## evaluate "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.10"
## expm "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.999-2"
## FactoMineR "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.39"
## fastmatch "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1-0"
## flashClust "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.01-2"
## forcats "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.2.0"
## foreach "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.4.3"
## futile.logger "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.4.3"
## futile.options "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.0"
## gdata "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.18.0"
## gdsfmt "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.14.0"
## ggplot2 "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.2.1"
## ggvis "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.4.3"
## git2r "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.19.0"
## glue "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.2.0"
## gmodels "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.16.2"
## gplots "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "3.0.1"
## gridBase "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.4-7"
## gridExtra "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.3"
## gtools "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "3.5.0"
## haven "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.0"
## hexbin "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.27.1"
## highr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.6"
## hms "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.3"
## htmltools "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.3.6"
## htmlwidgets "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.9"
## httpuv "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.3.5"
## httr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.3.1"
## hunspell "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.6"
## igraph "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.2"
## IRanges "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.12.0"
## irlba "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.3.1"
## iterators "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.8"
## jsonlite "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.5"
## knitr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.15.1"
## lambda.r "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.2"
## lazyeval "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.2.1"
## leaflet "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.0"
## leaps "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "3.0"
## LearnBayes "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.15"
## limma "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "3.34.2"
## lme4 "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1-14"
## lmtest "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.9-35"
## loa "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.2.38"
## locfit "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.5-9.1"
## lubridate "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.6.0"
## magrittr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.5"
## maptools "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.9-2"
## markdown "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.8"
## MatrixModels "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.4-1"
## memoise "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.0"
## mime "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.5"
## minqa "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.2.4"
## mnormt "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.5-5"
## modelr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1.1"
## myp "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1.0"
## nloptr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.4"
## NMF "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.20.6"
## nortest "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0-4"
## openssl "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.9.7"
## packrat "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.4.8-1"
## pbkrtest "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.4-7"
## PBSmapping "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.70.4"
## pegas "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.9"
## permute "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.9-4"
## phangorn "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.3.1"
## pkgconfig "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.0.1"
## pkgmaker "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.22"
## PKI "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1-5.1"
## plogr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1-1"
## plyr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.8.4"
## png "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1-7"
## polysat "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.7-2"
## poppr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.4.1"
## poweRlaw "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.70.1"
## praise "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.0"
## psych "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.7.8"
## purrr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.2.4"
## pvclust "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.0-0"
## quadprog "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.5-5"
## quantreg "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "5.34"
## R6 "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.2.2"
## raster "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.5-8"
## Rcpp "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.12.13"
## RcppEigen "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.3.3.3.0"
## RCurl "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.95-4.8"
## readr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.1"
## readxl "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.0"
## registry "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.3"
## rematch "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.1"
## reprex "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1.1"
## rex "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.2"
## RgoogleMaps "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.4.1"
## rJava "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.9-9"
## RJSONIO "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.3-0"
## rlang "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1.2"
## rmarkdown "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.6"
## RMThreshold "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1"
## rngtools "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.2.4"
## rprojroot "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.2"
## rsconnect "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.8.5"
## rstudioapi "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.7"
## rvest "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.3.2"
## S4Vectors "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.16.0"
## scales "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.5.0"
## scatterplot3d "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.3-40"
## segmented "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.5-2.2"
## selectr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.3-1"
## seqinr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "3.4-5"
## shiny "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.5"
## shinythemes "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.1"
## sm "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.2-5.4"
## SNPRelate "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.12.0"
## snpStats "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.28.0"
## sourcetools "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.1.6"
## sp "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.2-5"
## SparseM "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.77"
## spdep "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.6-15"
## splancs "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "2.01-40"
## stringdist "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "0.9.4.6"
## stringi "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.1.5"
## stringr "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.2.0"
## testthat "/home/uwe/R/i686-pc-linux-gnu-library/3.4" "1.0.2"
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## permute NA
## phangorn NA
## pkgconfig NA
## pkgmaker NA
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## plyr NA
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## psych NA
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## selectr NA
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## stringr NA
## testthat NA
## tibble NA
## tidyr NA
## tidyselect NA
## tidyverse NA
## tripack NA
## tufte NA
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## vegan NA
## VennDiagram NA
## VGAM NA
## vioplot NA
## viridis NA
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## whisker NA
## withr NA
## WriteXLS NA
## XML NA
## xml2 NA
## xtable NA
## XVector NA
## yaml NA
## zlibbioc NA
## zoo NA
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## crayon NA
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## proto NA
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## rkwardtests NA
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## sp NA
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## base "base"
## boot "recommended"
## class "recommended"
## cluster "recommended"
## codetools "recommended"
## compiler "base"
## datasets "base"
## foreign "recommended"
## graphics "base"
## grDevices "base"
## grid "base"
## KernSmooth "recommended"
## lattice "recommended"
## MASS "recommended"
## Matrix "recommended"
## methods "base"
## mgcv "recommended"
## nlme "recommended"
## nnet "recommended"
## parallel "base"
## rpart "recommended"
## spatial "recommended"
## splines "base"
## stats "base"
## stats4 "base"
## survival "recommended"
## tcltk "base"
## tools "base"
## utils "base"
## Depends
## ade4 "R (>= 2.10)"
## adegenet "R (>= 2.14), methods, ade4"
## akima "R (>= 2.0.0)"
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## assertthat NA
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## BiocInstaller "R (>= 3.4.0)"
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## brew NA
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## DT NA
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## ellipse "R (>= 2.0.0),graphics,stats"
## EMT NA
## evaluate "R (>= 3.0.2)"
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## hexbin "R (>= 2.10), methods"
## highr "R (>= 3.0.2)"
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## htmltools "R (>= 2.14.1)"
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## nortest NA
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## praise NA
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## SNPRelate "R (>= 2.15), gdsfmt (>= 1.8.3)"
## snpStats "R(>= 2.10.0), survival, Matrix, methods"
## sourcetools "R (>= 3.0.2)"
## sp "R (>= 3.0.0), methods"
## SparseM "R (>= 2.15), methods"
## spdep "R (>= 3.0.0), methods, sp (>= 1.0), Matrix (>= 1.0.12)"
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## stringdist "R (>= 2.15.3)"
## stringi "R (>= 2.14)"
## stringr "R (>= 2.14)"
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## tibble "R (>= 3.1.0)"
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## tidyselect "R (>= 3.1.0)"
## tidyverse NA
## tripack NA
## tufte NA
## vcd "R (>= 2.4.0), grid"
## vegan "permute (>= 0.9-0), lattice, R (>= 3.0.0)"
## VennDiagram "R (>= 2.14.1), grid (>= 2.14.1), futile.logger"
## VGAM "R (>= 3.4.0), methods, stats, stats4, splines"
## vioplot "sm"
## viridis "R (>= 2.10), viridisLite (>= 0.2.0)"
## viridisLite "R (>= 2.10)"
## whisker NA
## withr "R (>= 3.0.2)"
## WriteXLS NA
## XML "R (>= 2.13.0), methods, utils"
## xml2 "R (>= 3.1.0)"
## xtable "R (>= 2.10.0)"
## XVector "R (>= 2.8.0), methods, BiocGenerics (>= 0.19.2), S4Vectors (>=\n0.15.14), IRanges (>= 2.9.18)"
## yaml NA
## zlibbioc NA
## zoo "R (>= 2.10.0), stats"
## abind "R (>= 1.5.0)"
## colorspace "R (>= 2.13.0), methods"
## crayon NA
## dichromat "R (>= 2.10), stats"
## digest "R (>= 2.4.1)"
## doMC "R (>= 2.14.0), foreach(>= 1.2.0), iterators(>= 1.0.0),\nparallel"
## foreach "R (>= 2.5.0)"
## ggplot2 "R (>= 2.14)"
## gtable "R (>= 2.14), grid"
## iterators "R (>= 2.5.0), utils"
## labeling NA
## littler NA
## magrittr NA
## mapproj "maps (>= 2.3-0)"
## maps "R (>= 2.14.0)"
## memoise NA
## multicore "R (>= 2.14.0)"
## munsell NA
## pkgKitten NA
## plyr "R (>= 3.1.0)"
## proto NA
## RColorBrewer "R (>= 2.0.0)"
## Rcpp "R (>= 3.0.0)"
## reshape2 NA
## rkward "\nR (>= 2.9.0),methods"
## rkwardtests "\nR (>= 2.9.0),methods"
## scales "R (>= 2.13)"
## sp "R (>= 2.14.0)"
## stringi "R (>= 2.13.1)"
## stringr "R (>= 2.14)"
## base NA
## boot "R (>= 3.0.0), graphics, stats"
## class "R (>= 3.0.0), stats, utils"
## cluster "R (>= 3.0.1)"
## codetools "R (>= 2.1)"
## compiler NA
## datasets NA
## foreign "R (>= 3.0.0)"
## graphics NA
## grDevices NA
## grid NA
## KernSmooth "R (>= 2.5.0), stats"
## lattice "R (>= 3.0.0)"
## MASS "R (>= 3.1.0), grDevices, graphics, stats, utils"
## Matrix "R (>= 3.0.1)"
## methods NA
## mgcv "R (>= 2.14.0), nlme (>= 3.1-64)"
## nlme "R (>= 3.0.2)"
## nnet "R (>= 2.14.0), stats, utils"
## parallel NA
## rpart "R (>= 2.15.0), graphics, stats, grDevices"
## spatial "R (>= 3.0.0), graphics, stats, utils"
## splines NA
## stats NA
## stats4 NA
## survival "R (>= 2.13.0)"
## tcltk NA
## tools NA
## utils NA
## Imports
## ade4 "graphics, grDevices, methods, stats, utils"
## adegenet "utils, stats, grDevices, MASS, igraph, ape, shiny, ggplot2,\nseqinr, parallel, spdep, boot, reshape2, dplyr (>= 0.4.1),\nvegan"
## akima "sp"
## ape "nlme, lattice, graphics, methods, stats, tools, utils,\nparallel, Rcpp (>= 0.12.0)"
## assertthat "tools"
## backports "utils"
## base64enc NA
## BH NA
## bibtex NA
## bindr NA
## bindrcpp "Rcpp, bindr"
## BiocGenerics "methods, utils, graphics, stats, parallel"
## BiocInstaller NA
## Biostrings "graphics, methods, stats, utils"
## bitops NA
## brew NA
## broom "plyr, dplyr, tidyr, psych, stringr, reshape2, nlme, methods"
## callr NA
## car "MASS, mgcv, nnet, pbkrtest (>= 0.4-4), quantreg, grDevices,\nutils, stats, graphics"
## caTools "bitops"
## CCP NA
## cellranger "rematch, tibble"
## cli "assertthat, crayon, methods"
## clipr "utils"
## coda "lattice"
## commonmark NA
## cowplot "grid (>= 3.0.0), gtable (>= 0.1.2), plyr (>= 1.8.2),\ngrDevices, methods, utils"
## crayon "grDevices, methods, utils"
## crosstalk "htmltools (>= 0.3.5), jsonlite, lazyeval, R6, shiny (>= 0.11),\nggplot2"
## curl NA
## data.table "methods"
## DBI NA
## dbplyr "assertthat, DBI (>= 0.5), dplyr (>= 0.5.0.9004), glue,\nmethods, purrr, rlang (>= 0.1.0), tibble (>= 1.3.0.9007), R6,\nutils"
## deldir "graphics, grDevices"
## desc "assertthat, utils, R6, crayon, rprojroot"
## devtools "httr (>= 0.4), utils, tools, methods, memoise (>= 1.0.0),\nwhisker, digest, rstudioapi (>= 0.2.0), jsonlite, stats, git2r\n(>= 0.11.0), withr"
## doParallel NA
## dplyr "assertthat, bindrcpp (>= 0.2), glue (>= 1.1.1), magrittr,\nmethods, pkgconfig, rlang (>= 0.1.2), R6, Rcpp (>= 0.12.7),\ntibble (>= 1.3.1), utils"
## DT "htmltools (>= 0.3.5), htmlwidgets (>= 0.6), magrittr"
## e1071 "graphics, grDevices, class, stats, methods, utils"
## edgeR "graphics, stats, utils, methods, locfit, Rcpp"
## ellipse NA
## EMT NA
## evaluate "methods, stringr (>= 0.6.2)"
## expm "methods"
## FactoMineR "car,cluster,ellipse,flashClust,graphics,grDevices,lattice,leaps,MASS,scatterplot3d,stats,utils"
## fastmatch NA
## flashClust NA
## forcats "tibble, magrittr"
## foreach "codetools, utils, iterators"
## futile.logger "utils, lambda.r (>= 1.1.0), futile.options"
## futile.options NA
## gdata "gtools, stats, methods, utils"
## gdsfmt NA
## ggplot2 "digest, grid, gtable (>= 0.1.1), MASS, plyr (>= 1.7.1),\nreshape2, scales (>= 0.4.1), stats, tibble, lazyeval"
## ggvis "assertthat, jsonlite (>= 0.9.11), shiny (>= 0.11.1), magrittr,\ndplyr (>= 0.4.0), lazyeval, htmltools (>= 0.2.4), methods"
## git2r "graphics, utils"
## glue "methods"
## gmodels "MASS, gdata"
## gplots "gtools, gdata, stats, caTools, KernSmooth"
## gridBase "graphics, grid"
## gridExtra "gtable, grid, grDevices, graphics, utils"
## gtools NA
## haven "Rcpp (>= 0.11.4), readr (>= 0.1.0), hms, tibble, forcats (>=\n0.2.0)"
## hexbin "lattice, grid, graphics, grDevices, stats, utils"
## highr NA
## hms "methods"
## htmltools "utils, digest, Rcpp"
## htmlwidgets "htmltools (>= 0.3), jsonlite (>= 0.9.16), yaml"
## httpuv "Rcpp (>= 0.11.0), utils"
## httr "jsonlite, mime, curl (>= 0.9.1), openssl (>= 0.8), R6"
## hunspell "Rcpp, digest"
## igraph "graphics, grDevices, irlba, magrittr, Matrix, pkgconfig (>=\n2.0.0), stats, utils"
## IRanges "stats4"
## irlba "stats, methods"
## iterators NA
## jsonlite NA
## knitr "evaluate (>= 0.10), digest, highr, markdown, stringr (>= 0.6),\nyaml, methods, tools"
## lambda.r NA
## lazyeval NA
## leaflet "base64enc, crosstalk, htmlwidgets, htmltools, magrittr,\nmarkdown, methods, png, RColorBrewer, raster, scales (>=\n0.2.5), sp, stats, viridis"
## leaps NA
## LearnBayes NA
## limma "grDevices, graphics, stats, utils, methods"
## lme4 "graphics, grid, splines, utils, parallel, MASS, lattice, nlme\n(>= 3.1-123), minqa (>= 1.1.15), nloptr (>= 1.0.4)"
## lmtest "graphics"
## loa "methods, MASS, grid, png, RgoogleMaps, RColorBrewer, mgcv"
## locfit "lattice"
## lubridate "stringr"
## magrittr NA
## maptools "foreign (>= 0.8), methods, grid, lattice, stats, utils,\ngrDevices"
## markdown "utils, mime (>= 0.3)"
## MatrixModels "stats, methods, Matrix (>= 1.1-5)"
## memoise "digest (>= 0.6.3)"
## mime "tools"
## minqa "Rcpp (>= 0.9.10)"
## mnormt NA
## modelr "magrittr, purrr (>= 0.2.2), lazyeval (>= 0.2.0), tibble,\nbroom, dplyr, tidyr (>= 0.6.0)"
## myp NA
## nloptr NA
## NMF "graphics, stats, stringr (>= 1.0.0), digest, grid, grDevices,\ngridBase, colorspace, RColorBrewer, foreach, doParallel,\nggplot2, reshape2"
## nortest "stats"
## openssl NA
## packrat "tools, utils"
## pbkrtest "Matrix (>= 1.2.3), parallel, MASS, methods"
## PBSmapping NA
## pegas "graphics, utils"
## permute "stats"
## phangorn "quadprog, igraph (>= 1.0), Matrix, parallel, methods, utils,\nstats, graphics, grDevices, fastmatch, magrittr, Rcpp (>=\n0.12.0)"
## pkgconfig "utils"
## pkgmaker "methods, tools, codetools, digest, stringr, xtable, grDevices"
## PKI NA
## plogr NA
## plyr "Rcpp (>= 0.11.0)"
## png NA
## polysat "methods, stats, utils, grDevices, graphics"
## poppr "stats, graphics, grDevices, utils, vegan, ggplot2, phangorn,\nape (>= 3.1-1), igraph, methods, ade4, pegas, reshape2, dplyr\n(>= 0.4), boot, shiny, magrittr"
## poweRlaw "VGAM, parallel, methods, utils, stats"
## praise NA
## psych "mnormt,parallel,stats,graphics,grDevices,methods,foreign,lattice,nlme"
## purrr "magrittr (>= 1.5), rlang (>= 0.1), tibble"
## pvclust NA
## quadprog NA
## quantreg "methods, graphics, Matrix, MatrixModels"
## R6 NA
## raster "Rcpp"
## Rcpp "methods, utils"
## RcppEigen "Matrix (>= 1.1-0), Rcpp (>= 0.11.0), stats, utils"
## RCurl NA
## readr "Rcpp (>= 0.12.0.5), tibble, hms, R6"
## readxl "cellranger, Rcpp (>= 0.11.6), tibble (>= 1.1)"
## registry "utils"
## rematch NA
## reprex "callr, clipr (>= 0.3.0), knitr, rmarkdown, tools, utils,\nwhisker"
## rex "magrittr, lazyeval"
## RgoogleMaps "graphics, stats, utils, grDevices, methods, png"
## rJava NA
## RJSONIO "methods"
## rlang NA
## rmarkdown "tools, utils, knitr (>= 1.14), yaml (>= 2.1.5), htmltools (>=\n0.3.5), caTools, evaluate (>= 0.8), base64enc, jsonlite,\nrprojroot, methods, stringr (>= 1.2.0)"
## RMThreshold "Matrix, png"
## rngtools "stringr, digest"
## rprojroot "backports"
## rsconnect "digest, PKI, RCurl, RJSONIO, packrat (>= 0.4.8-1), yaml (>=\n2.1.5), rstudioapi (>= 0.5)"
## rstudioapi NA
## rvest "httr (>= 0.5), selectr, magrittr"
## S4Vectors NA
## scales "RColorBrewer, dichromat, plyr, munsell (>= 0.2), labeling,\nRcpp, R6, viridisLite"
## scatterplot3d "grDevices, graphics, stats"
## segmented NA
## selectr "methods, stringr"
## seqinr "ade4,segmented"
## shiny "utils, httpuv (>= 1.3.5), mime (>= 0.3), jsonlite (>= 0.9.16),\nxtable, digest, htmltools (>= 0.3.5), R6 (>= 2.0), sourcetools,\ntools"
## shinythemes "shiny (>= 0.11)"
## sm NA
## SNPRelate NA
## snpStats "graphics, grDevices, stats, utils, BiocGenerics, zlibbioc"
## sourcetools NA
## sp "utils, stats, graphics, grDevices, lattice, grid"
## SparseM "graphics, stats, utils"
## spdep "LearnBayes, deldir, boot (>= 1.3-1), splines, coda, nlme,\nMASS, stats, gmodels, expm, graphics, grDevices, utils"
## splancs "stats, graphics, grDevices, methods"
## stringdist "parallel"
## stringi "tools, utils, stats"
## stringr "stringi (>= 0.4.1), magrittr"
## testthat "digest, crayon, praise, magrittr, R6, methods"
## tibble "methods, rlang, Rcpp (>= 0.12.3), utils"
## tidyr "dplyr (>= 0.7.0), glue, magrittr, purrr, rlang, Rcpp, stringi,\ntibble, tidyselect"
## tidyselect "glue, purrr, rlang (>= 0.1), Rcpp (>= 0.12.0)"
## tidyverse "broom, cli, crayon, dplyr, dbplyr, forcats, ggplot2, haven,\nhms, httr, jsonlite, lubridate, magrittr, modelr, purrr, readr,\nreadxl, reprex, rlang, rstudioapi, rvest, stringr, tibble,\ntidyr, xml2"
## tripack NA
## tufte "htmltools, knitr (>= 1.12), rmarkdown"
## vcd "stats, utils, MASS, grDevices, colorspace, lmtest"
## vegan "MASS, cluster, mgcv"
## VennDiagram NA
## VGAM NA
## vioplot NA
## viridis "stats, ggplot2 (>= 1.0.1), gridExtra"
## viridisLite NA
## whisker NA
## withr "stats, lattice, graphics, grDevices"
## WriteXLS "utils"
## XML NA
## xml2 "Rcpp"
## xtable "stats, utils"
## XVector "methods, zlibbioc, BiocGenerics, S4Vectors, IRanges"
## yaml NA
## zlibbioc NA
## zoo "utils, graphics, grDevices, lattice (>= 0.20-27)"
## abind NA
## colorspace NA
## crayon "memoise, grDevices, methods, utils"
## dichromat NA
## digest NA
## doMC "utils"
## foreach "codetools, utils, iterators"
## ggplot2 "digest, grid, gtable (>= 0.1.1), MASS, plyr (>= 1.7.1),\nreshape2, scales (>= 0.3.0), stats"
## gtable NA
## iterators NA
## labeling NA
## littler NA
## magrittr NA
## mapproj "stats, graphics"
## maps "graphics, utils"
## memoise "digest"
## multicore "parallel, tools"
## munsell "colorspace"
## pkgKitten NA
## plyr "Rcpp (>= 0.11.0)"
## proto NA
## RColorBrewer NA
## Rcpp "methods, utils"
## reshape2 "plyr (>= 1.8.1), stringr, Rcpp"
## rkward NA
## rkwardtests NA
## scales "RColorBrewer, dichromat, plyr, munsell (>= 0.2), labeling,\nmethods, Rcpp"
## sp "methods, graphics, utils, lattice, grid"
## stringi "tools, utils, stats"
## stringr "stringi (>= 0.4.1), magrittr"
## base NA
## boot NA
## class "MASS"
## cluster "graphics, grDevices, stats, utils"
## codetools NA
## compiler NA
## datasets NA
## foreign "methods, utils, stats"
## graphics "grDevices"
## grDevices NA
## grid "grDevices, utils"
## KernSmooth NA
## lattice "grid, grDevices, graphics, stats, utils"
## MASS "methods"
## Matrix "methods, graphics, grid, stats, utils, lattice"
## methods "utils, stats"
## mgcv "methods, stats, graphics, Matrix"
## nlme "graphics, stats, utils, lattice"
## nnet NA
## parallel "tools, compiler"
## rpart NA
## spatial NA
## splines "graphics, stats"
## stats "utils, grDevices, graphics"
## stats4 "graphics, methods, stats"
## survival "graphics, Matrix, methods, splines, stats, utils"
## tcltk "utils"
## tools NA
## utils NA
## LinkingTo
## ade4 NA
## adegenet NA
## akima NA
## ape "Rcpp"
## assertthat NA
## backports NA
## base64enc NA
## BH NA
## bibtex NA
## bindr NA
## bindrcpp "Rcpp, plogr"
## BiocGenerics NA
## BiocInstaller NA
## Biostrings "S4Vectors, IRanges, XVector"
## bitops NA
## brew NA
## broom NA
## callr NA
## car NA
## caTools NA
## CCP NA
## cellranger NA
## cli NA
## clipr NA
## coda NA
## commonmark NA
## cowplot NA
## crayon NA
## crosstalk NA
## curl NA
## data.table NA
## DBI NA
## dbplyr NA
## deldir NA
## desc NA
## devtools NA
## doParallel NA
## dplyr "Rcpp (>= 0.12.0), BH (>= 1.58.0-1), bindrcpp, plogr"
## DT NA
## e1071 NA
## edgeR "Rcpp"
## ellipse NA
## EMT NA
## evaluate NA
## expm NA
## FactoMineR NA
## fastmatch NA
## flashClust NA
## forcats NA
## foreach NA
## futile.logger NA
## futile.options NA
## gdata NA
## gdsfmt NA
## ggplot2 NA
## ggvis NA
## git2r NA
## glue NA
## gmodels NA
## gplots NA
## gridBase NA
## gridExtra NA
## gtools NA
## haven "Rcpp"
## hexbin NA
## highr NA
## hms NA
## htmltools "Rcpp"
## htmlwidgets NA
## httpuv "Rcpp"
## httr NA
## hunspell "Rcpp"
## igraph NA
## IRanges "S4Vectors"
## irlba "Matrix"
## iterators NA
## jsonlite NA
## knitr NA
## lambda.r NA
## lazyeval NA
## leaflet NA
## leaps NA
## LearnBayes NA
## limma NA
## lme4 "Rcpp (>= 0.10.5), RcppEigen"
## lmtest NA
## loa NA
## locfit NA
## lubridate NA
## magrittr NA
## maptools NA
## markdown NA
## MatrixModels NA
## memoise NA
## mime NA
## minqa "Rcpp"
## mnormt NA
## modelr NA
## myp NA
## nloptr NA
## NMF NA
## nortest NA
## openssl NA
## packrat NA
## pbkrtest NA
## PBSmapping NA
## pegas NA
## permute NA
## phangorn "Rcpp"
## pkgconfig NA
## pkgmaker NA
## PKI NA
## plogr NA
## plyr "Rcpp"
## png NA
## polysat NA
## poppr NA
## poweRlaw NA
## praise NA
## psych NA
## purrr NA
## pvclust NA
## quadprog NA
## quantreg NA
## R6 NA
## raster "Rcpp"
## Rcpp NA
## RcppEigen "Rcpp"
## RCurl NA
## readr "Rcpp, BH"
## readxl "Rcpp"
## registry NA
## rematch NA
## reprex NA
## rex NA
## RgoogleMaps NA
## rJava NA
## RJSONIO NA
## rlang NA
## rmarkdown NA
## RMThreshold NA
## rngtools NA
## rprojroot NA
## rsconnect NA
## rstudioapi NA
## rvest NA
## S4Vectors NA
## scales "Rcpp"
## scatterplot3d NA
## segmented NA
## selectr NA
## seqinr NA
## shiny NA
## shinythemes NA
## sm NA
## SNPRelate "gdsfmt"
## snpStats NA
## sourcetools NA
## sp NA
## SparseM NA
## spdep NA
## splancs NA
## stringdist NA
## stringi NA
## stringr NA
## testthat NA
## tibble "Rcpp"
## tidyr "Rcpp"
## tidyselect "Rcpp (>= 0.12.0),"
## tidyverse NA
## tripack NA
## tufte NA
## vcd NA
## vegan NA
## VennDiagram NA
## VGAM NA
## vioplot NA
## viridis NA
## viridisLite NA
## whisker NA
## withr NA
## WriteXLS NA
## XML NA
## xml2 "Rcpp (>= 0.11.4.6), BH"
## xtable NA
## XVector "S4Vectors, IRanges"
## yaml NA
## zlibbioc NA
## zoo NA
## abind NA
## colorspace NA
## crayon NA
## dichromat NA
## digest NA
## doMC NA
## foreach NA
## ggplot2 NA
## gtable NA
## iterators NA
## labeling NA
## littler NA
## magrittr NA
## mapproj NA
## maps NA
## memoise NA
## multicore NA
## munsell NA
## pkgKitten NA
## plyr "Rcpp"
## proto NA
## RColorBrewer NA
## Rcpp NA
## reshape2 "Rcpp"
## rkward NA
## rkwardtests NA
## scales "Rcpp"
## sp NA
## stringi NA
## stringr NA
## base NA
## boot NA
## class NA
## cluster NA
## codetools NA
## compiler NA
## datasets NA
## foreign NA
## graphics NA
## grDevices NA
## grid NA
## KernSmooth NA
## lattice NA
## MASS NA
## Matrix NA
## methods NA
## mgcv NA
## nlme NA
## nnet NA
## parallel NA
## rpart NA
## spatial NA
## splines NA
## stats NA
## stats4 NA
## survival NA
## tcltk NA
## tools NA
## utils NA
## Suggests
## ade4 "ade4TkGUI, adegraphics, adephylo, ape, CircStats, deldir,\nlattice, maptools, MASS, pixmap, sp, spdep, splancs, waveslim"
## adegenet "pegas, hierfstat, akima, maps, splancs, adehabitat, tripack,\ntestthat"
## akima NA
## ape "gee, expm"
## assertthat "testthat"
## backports NA
## base64enc NA
## BH NA
## bibtex NA
## bindr "testthat"
## bindrcpp "testthat"
## BiocGenerics "Biobase, S4Vectors, IRanges, GenomicRanges, AnnotationDbi,\noligoClasses, oligo, affyPLM, flowClust, affy, DESeq2, MSnbase,\nannotate, RUnit"
## BiocInstaller "devtools, RUnit, BiocGenerics"
## Biostrings "BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=\n1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),\nBSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,\nhgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy\n(>= 1.41.3), affydata (>= 1.11.5), RUnit"
## bitops NA
## brew NA
## broom "knitr, boot, survival, gam, glmnet, lfe, Lahman, MASS, sp,\nmaps, maptools, multcomp, testthat, lme4, zoo, lmtest, plm,\nbiglm, ggplot2, nnet, geepack, AUC, ergm, network,\nstatnet.common, xergm, btergm, binGroup, Hmisc, bbmle, gamlss,\nrstan, rstanarm, brms, coda, gmm, Matrix, ks, purrr, orcutt,\nmgcv, lmodel2, poLCA, mclust, covr, lsmeans, betareg, robust,\nakima"
## callr "covr, testthat"
## car "alr4, boot, coxme, leaps, lme4, lmtest, Matrix, MatrixModels,\nnlme, rgl (>= 0.93.960), sandwich, SparseM, survival, survey,\nnloptr"
## caTools "MASS, rpart"
## CCP NA
## cellranger "covr, testthat (>= 1.0.0), knitr, rmarkdown"
## cli "covr, mockery, testthat, withr"
## clipr "rstudioapi (>= 0.5), testthat"
## coda NA
## commonmark "curl"
## cowplot "knitr, gridGraphics, viridis"
## crayon "mockery, rstudioapi, testthat, withr"
## crosstalk NA
## curl "testthat (>= 1.0.0), knitr, jsonlite, rmarkdown, magrittr,\nhttpuv, webutils"
## data.table "bit64, knitr, nanotime, chron, ggplot2 (>= 0.9.0), plyr,\nreshape, reshape2, testthat (>= 0.4), hexbin, fastmatch, nlme,\nxts, gdata, GenomicRanges, caret, curl, zoo, plm, rmarkdown,\nparallel"
## DBI "blob, covr, hms, knitr, magrittr, rprojroot, rmarkdown,\nRSQLite (>= 1.1-2), testthat, xml2"
## dbplyr "covr, knitr, Lahman (>= 3.0-1), nycflights13, rmarkdown,\nRSQLite (>= 1.0.0), RMySQL, RPostgreSQL, testthat"
## deldir "polyclip"
## desc "covr, testthat, whoami, withr"
## devtools "curl (>= 0.9), crayon, testthat (>= 1.0.2), BiocInstaller,\nRcpp (>= 0.10.0), MASS, rmarkdown, knitr, hunspell (>= 2.0),\nlintr (>= 0.2.1), bitops, roxygen2 (>= 5.0.0), evaluate,\nrversions, covr, gmailr (> 0.7.0)"
## doParallel "caret, mlbench, rpart"
## dplyr "bit64, covr, dbplyr, dtplyr, DBI, ggplot2, hms, knitr, Lahman\n(>= 3.0-1), mgcv, microbenchmark, nycflights13, rmarkdown,\nRMySQL, RPostgreSQL, RSQLite, testthat, withr"
## DT "jsonlite (>= 0.9.16), knitr (>= 1.8), rmarkdown, shiny (>=\n0.12.1)"
## e1071 "cluster, mlbench, nnet, randomForest, rpart, SparseM, xtable,\nMatrix, MASS"
## edgeR "MASS, statmod, splines, KernSmooth"
## ellipse "MASS"
## EMT NA
## evaluate "testthat, lattice, ggplot2"
## expm "RColorBrewer, sfsmisc, Rmpfr"
## FactoMineR "missMDA,knitr"
## fastmatch NA
## flashClust NA
## forcats "ggplot2, testthat, covr"
## foreach "randomForest"
## futile.logger "testthat, jsonlite"
## futile.options NA
## gdata "RUnit"
## gdsfmt "parallel, digest, crayon, RUnit, knitr, BiocGenerics"
## ggplot2 "covr, ggplot2movies, hexbin, Hmisc, lattice, mapproj, maps,\nmaptools, mgcv, multcomp, nlme, testthat (>= 0.11.0), quantreg,\nknitr, rpart, rmarkdown, svglite"
## ggvis "MASS, mgcv, lubridate, testthat (>= 0.8.1), knitr (>= 1.6),\nrmarkdown"
## git2r "getPass"
## glue "testthat, covr, magrittr, crayon, knitr, rmarkdown, DBI,\nRSQLite, R.utils, forcats, microbenchmark, rprintf, stringr,\nggplot2"
## gmodels "gplots, gtools, Matrix, nlme, lme4 (>= 0.999999-0)"
## gplots "grid, MASS"
## gridBase "lattice"
## gridExtra "ggplot2, egg, lattice, knitr, testthat"
## gtools NA
## haven "testthat, knitr, rmarkdown, covr"
## hexbin "marray, affy, Biobase, limma"
## highr "knitr, testit"
## hms "testthat, lubridate"
## htmltools "markdown, testthat"
## htmlwidgets "knitr (>= 1.8)"
## httpuv NA
## httr "httpuv, jpeg, knitr, png, testthat (>= 0.8.0), readr, xml2,\nrmarkdown, covr"
## hunspell "testthat, devtools, pdftools, janeaustenr, wordcloud2, knitr,\nrmarkdown"
## igraph "ape, graph, igraphdata, NMF, rgl, scales, stats4, tcltk,\ntestthat"
## IRanges "XVector, GenomicRanges, Rsamtools, GenomicAlignments,\nGenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,\nRUnit"
## irlba "PMA"
## iterators "RUnit"
## jsonlite "httr, curl, plyr, testthat, knitr, rmarkdown, R.rsp, sp"
## knitr "formatR, testit, rgl (>= 0.95.1201), codetools, rmarkdown,\nhtmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10), png, jpeg,\nXML, RCurl, DBI (>= 0.4-1), tibble"
## lambda.r "RUnit"
## lazyeval "knitr, rmarkdown (>= 0.2.65), testthat, covr"
## leaflet "knitr, maps, sf, shiny, testit (>= 0.4), rgdal, rgeos, R6,\nRJSONIO, purrr, testthat"
## leaps "biglm"
## LearnBayes NA
## limma "affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,\ngplots, illuminaio, locfit, MASS, org.Hs.eg.db, splines,\nstatmod (>= 1.2.2), vsn"
## lme4 "knitr, boot, PKPDmodels, MEMSS, testthat (>= 0.8.1), ggplot2,\nmlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR2, numDeriv"
## lmtest "car, strucchange, sandwich, dynlm, stats4, survival, AER"
## loa NA
## locfit "akima, gam"
## lubridate "testthat, knitr, covr"
## magrittr "testthat, knitr"
## maptools "rgeos (>= 0.1-8), spatstat (>= 1.18), PBSmapping, maps,\nRColorBrewer, raster, polyclip, spatstat.utils"
## markdown "knitr, RCurl"
## MatrixModels NA
## memoise "testthat, aws.s3, httr, covr"
## mime NA
## minqa NA
## mnormt NA
## modelr "testthat, ggplot2, covr, compiler"
## myp NA
## nloptr "testthat (>= 0.8.1)"
## NMF "RcppOctave (>= 0.11), fastICA, doMPI, bigmemory (>= 4.2),\nsynchronicity, corpcor, xtable, devtools, knitr, bibtex, RUnit,\nmail, Biobase"
## nortest NA
## openssl "testthat, digest, knitr, rmarkdown, jsonlite, jose"
## packrat "testthat (>= 0.7), devtools, httr, knitr, rmarkdown"
## pbkrtest NA
## PBSmapping "foreign, maptools, deldir"
## pegas NA
## permute "vegan (>= 2.0-0), testthat (>= 0.5), parallel"
## phangorn "testthat, seqLogo, seqinr, xtable, flashClust, rgl, knitr,\nrmarkdown, Biostrings"
## pkgconfig "covr, testthat, disposables (>= 1.0.3)"
## pkgmaker "devtools (>= 0.8), bibtex, RUnit, testthat, knitr,\nReportingTools, hwriter, argparse"
## PKI NA
## plogr "Rcpp"
## plyr "abind, testthat, tcltk, foreach, doParallel, itertools,\niterators, covr"
## png NA
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## praise "testthat"
## psych "GPArotation, lavaan, sem, lme4,Rcsdp, graph, Rgraphviz"
## purrr "covr, dplyr (>= 0.4.3), knitr, rmarkdown, testthat"
## pvclust "MASS, parallel"
## quadprog NA
## quantreg "tripack, akima, MASS, survival, rgl, logspline, nor1mix,\nFormula, zoo"
## R6 "knitr, microbenchmark, pryr, testthat, ggplot2, scales"
## raster "rgdal (>= 0.9-1), rgeos (>= 0.3-8), ncdf4, igraph, tcltk,\nparallel, rasterVis"
## Rcpp "RUnit, inline, rbenchmark, knitr, rmarkdown, pinp, pkgKitten\n(>= 0.1.2)"
## RcppEigen "inline, RUnit, pkgKitten"
## RCurl "Rcompression, XML"
## readr "curl, testthat, knitr, rmarkdown, stringi, covr"
## readxl "covr, knitr, rmarkdown, rprojroot (>= 1.1), testthat"
## registry NA
## rematch "covr, testthat"
## reprex "covr, devtools, formatR, fortunes, miniUI, rstudioapi, shiny,\nshinyjs, testthat"
## rex "testthat, knitr, rmarkdown, dplyr, ggplot2, Hmisc, stringr,\nrvest, roxygen2, covr"
## RgoogleMaps "PBSmapping, maptools, sp, loa, RColorBrewer, leaflet"
## rJava NA
## RJSONIO NA
## rlang "knitr, rmarkdown (>= 0.2.65), testthat, covr"
## rmarkdown "shiny (>= 0.11), tufte, testthat, digest, tibble"
## RMThreshold NA
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## rprojroot "testthat, knitr, withr, rmarkdown"
## rsconnect "scrypt, knitr, testthat, rmarkdown (>= 1.1), plumber (>=\n0.3.2)"
## rstudioapi "testthat, knitr, rmarkdown"
## rvest "testthat, knitr, png, stringi (>= 0.3.1), rmarkdown, covr"
## S4Vectors "IRanges, GenomicRanges, Matrix, ShortRead, graph, data.table,\nRUnit"
## scales "testthat (>= 0.8), bit64, covr, hms"
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## segmented NA
## selectr "testthat, XML, xml2"
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## shiny "datasets, Cairo (>= 1.5-5), testthat, knitr (>= 1.6),\nmarkdown, rmarkdown, ggplot2, magrittr"
## shinythemes NA
## sm "rpanel, tkrplot, rgl, misc3d, akima, gam"
## SNPRelate "parallel, RUnit, knitr, MASS, BiocGenerics"
## snpStats "hexbin"
## sourcetools "testthat"
## sp "RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.3-13), gstat,\nmaptools, deldir"
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## spdep "parallel, spam(>= 0.13-1), RANN, rgeos, RColorBrewer,\nlattice, xtable, maptools (>= 0.5-4), foreign, igraph, knitr"
## splancs NA
## stringdist "testthat"
## stringi NA
## stringr "testthat, knitr, htmltools, htmlwidgets, rmarkdown, covr"
## testthat "devtools, withr, covr"
## tibble "covr, dplyr, knitr (>= 1.5.32), microbenchmark, nycflights13,\ntestthat, rmarkdown, withr"
## tidyr "knitr, testthat, covr, gapminder, rmarkdown"
## tidyselect "dplyr, testthat"
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## tripack NA
## tufte NA
## vcd "KernSmooth, mvtnorm, kernlab, HSAUR, coin"
## vegan "parallel, tcltk, knitr"
## VennDiagram "testthat"
## VGAM "VGAMdata, MASS, mgcv"
## vioplot NA
## viridis "hexbin (>= 1.27.0), scales, MASS, knitr, dichromat,\ncolorspace, rasterVis, httr, mapproj, vdiffr, svglite (>=\n1.2.0), testthat, covr, rmarkdown"
## viridisLite "hexbin (>= 1.27.0), ggplot2 (>= 1.0.1), testthat, covr"
## whisker "markdown"
## withr "testthat, covr, DBI, RSQLite, methods"
## WriteXLS NA
## XML "bitops, RCurl"
## xml2 "testthat, curl, covr, knitr, rmarkdown, magrittr, httr"
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## XVector "Biostrings, drosophila2probe, RUnit"
## yaml "testthat"
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## zoo "coda, chron, DAAG, fts, ggplot2, mondate, scales,\nstrucchange, timeDate, timeSeries, tis, tseries, xts"
## abind NA
## colorspace "KernSmooth, MASS, kernlab, mvtnorm, vcd, tcltk, dichromat"
## crayon "testthat"
## dichromat NA
## digest "knitr, rmarkdown"
## doMC NA
## foreach "randomForest"
## ggplot2 "ggplot2movies, hexbin, Hmisc, mapproj, maps, maptools, mgcv,\nmultcomp, nlme, testthat, quantreg, knitr"
## gtable "testthat, plyr"
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## labeling NA
## littler "knitr, docopt, rcmdcheck"
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## memoise NA
## multicore NA
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## pkgKitten "whoami (>= 1.1.0)"
## plyr "abind, testthat, tcltk, foreach, doParallel, itertools,\niterators"
## proto "graph, Rgraphviz"
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## Rcpp "RUnit, inline, rbenchmark, highlight, pkgKitten (>= 0.1.2)"
## reshape2 "testthat (>= 0.8.0), lattice"
## rkward NA
## rkwardtests NA
## scales "testthat (>= 0.8)"
## sp "RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.2-20), gstat"
## stringi NA
## stringr "testthat, knitr"
## base "methods"
## boot "MASS, survival"
## class NA
## cluster "MASS"
## codetools NA
## compiler NA
## datasets NA
## foreign NA
## graphics NA
## grDevices "KernSmooth"
## grid "lattice"
## KernSmooth "MASS"
## lattice "KernSmooth, MASS, latticeExtra"
## MASS "lattice, nlme, nnet, survival"
## Matrix "expm, MASS"
## methods "codetools"
## mgcv "splines, parallel, survival, MASS"
## nlme "Hmisc, MASS"
## nnet "MASS"
## parallel "methods"
## rpart "survival"
## spatial "MASS"
## splines "Matrix, methods"
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## stats4 NA
## survival NA
## tcltk NA
## tools "codetools, methods, xml2, curl"
## utils "methods, XML"
## Enhances
## ade4 NA
## adegenet NA
## akima NA
## ape NA
## assertthat NA
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## base64enc "png"
## BH NA
## bibtex NA
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## Biostrings "Rmpi"
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## brew NA
## broom NA
## callr NA
## car NA
## caTools NA
## CCP NA
## cellranger NA
## cli NA
## clipr NA
## coda NA
## commonmark NA
## cowplot NA
## crayon NA
## crosstalk NA
## curl NA
## data.table NA
## DBI NA
## dbplyr NA
## deldir NA
## desc NA
## devtools NA
## doParallel "compiler, RUnit"
## dplyr NA
## DT NA
## e1071 NA
## edgeR NA
## ellipse NA
## EMT NA
## evaluate NA
## expm NA
## FactoMineR NA
## fastmatch NA
## flashClust NA
## forcats NA
## foreach "compiler, doMC, RUnit, doParallel"
## futile.logger NA
## futile.options NA
## gdata NA
## gdsfmt NA
## ggplot2 "sp"
## ggvis NA
## git2r NA
## glue NA
## gmodels NA
## gplots NA
## gridBase NA
## gridExtra NA
## gtools NA
## haven NA
## hexbin NA
## highr NA
## hms NA
## htmltools "knitr"
## htmlwidgets "shiny (>= 0.12)"
## httpuv NA
## httr NA
## hunspell NA
## igraph NA
## IRanges NA
## irlba NA
## iterators NA
## jsonlite NA
## knitr NA
## lambda.r NA
## lazyeval NA
## leaflet NA
## leaps NA
## LearnBayes NA
## limma NA
## lme4 NA
## lmtest NA
## loa NA
## locfit NA
## lubridate "chron, timeDate, zoo, xts, its, tis, timeSeries, fts, tseries"
## magrittr NA
## maptools "gpclib, RArcInfo"
## markdown NA
## MatrixModels NA
## memoise NA
## mime NA
## minqa NA
## mnormt NA
## modelr NA
## myp NA
## nloptr NA
## NMF NA
## nortest NA
## openssl NA
## packrat "BiocInstaller"
## pbkrtest NA
## PBSmapping NA
## pegas NA
## permute NA
## phangorn NA
## pkgconfig NA
## pkgmaker NA
## PKI "gmp"
## plogr NA
## plyr NA
## png NA
## polysat NA
## poppr NA
## poweRlaw NA
## praise NA
## psych NA
## purrr NA
## pvclust NA
## quadprog NA
## quantreg NA
## R6 NA
## raster NA
## Rcpp NA
## RcppEigen NA
## RCurl NA
## readr NA
## readxl NA
## registry NA
## rematch NA
## reprex NA
## rex NA
## RgoogleMaps NA
## rJava NA
## RJSONIO NA
## rlang NA
## rmarkdown NA
## RMThreshold NA
## rngtools NA
## rprojroot NA
## rsconnect "BiocInstaller"
## rstudioapi NA
## rvest NA
## S4Vectors NA
## scales NA
## scatterplot3d NA
## segmented NA
## selectr NA
## seqinr NA
## shiny NA
## shinythemes NA
## sm NA
## SNPRelate "SeqArray (>= 1.12.0)"
## snpStats NA
## sourcetools NA
## sp NA
## SparseM NA
## spdep NA
## splancs NA
## stringdist NA
## stringi NA
## stringr NA
## testthat NA
## tibble NA
## tidyr NA
## tidyselect NA
## tidyverse NA
## tripack NA
## tufte NA
## vcd NA
## vegan NA
## VennDiagram NA
## VGAM NA
## vioplot NA
## viridis NA
## viridisLite NA
## whisker NA
## withr NA
## WriteXLS NA
## XML NA
## xml2 NA
## xtable NA
## XVector NA
## yaml NA
## zlibbioc NA
## zoo NA
## abind NA
## colorspace NA
## crayon NA
## dichromat NA
## digest NA
## doMC "compiler, RUnit"
## foreach "compiler, doMC, RUnit, doParallel"
## ggplot2 "sp"
## gtable NA
## iterators NA
## labeling NA
## littler NA
## magrittr NA
## mapproj NA
## maps NA
## memoise NA
## multicore NA
## munsell NA
## pkgKitten NA
## plyr NA
## proto NA
## RColorBrewer NA
## Rcpp NA
## reshape2 NA
## rkward NA
## rkwardtests NA
## scales NA
## sp NA
## stringi NA
## stringr NA
## base NA
## boot NA
## class NA
## cluster NA
## codetools NA
## compiler NA
## datasets NA
## foreign NA
## graphics NA
## grDevices NA
## grid NA
## KernSmooth NA
## lattice "chron"
## MASS NA
## Matrix "MatrixModels, graph, SparseM, sfsmisc"
## methods NA
## mgcv NA
## nlme NA
## nnet NA
## parallel "snow, nws, Rmpi"
## rpart NA
## spatial NA
## splines NA
## stats NA
## stats4 NA
## survival NA
## tcltk NA
## tools NA
## utils NA
## License License_is_FOSS
## ade4 "GPL (>= 2)" NA
## adegenet "GPL (>= 2)" NA
## akima "ACM | file LICENSE" NA
## ape "GPL (>= 2)" NA
## assertthat "GPL-3" NA
## backports "GPL-2" NA
## base64enc "GPL-2 | GPL-3" NA
## BH "BSL-1.0" NA
## bibtex "GPL (>= 2)" NA
## bindr "MIT + file LICENSE" NA
## bindrcpp "MIT + file LICENSE" NA
## BiocGenerics "Artistic-2.0" NA
## BiocInstaller "Artistic-2.0" NA
## Biostrings "Artistic-2.0" NA
## bitops "GPL (>= 2)" NA
## brew "GPL-2" NA
## broom "MIT + file LICENSE" NA
## callr "MIT + file LICENSE" NA
## car "GPL (>= 2)" NA
## caTools "GPL-3" NA
## CCP "GPL" NA
## cellranger "MIT + file LICENSE" NA
## cli "MIT + file LICENSE" NA
## clipr "GPL-3" NA
## coda "GPL (>= 2)" NA
## commonmark "BSD_2_clause + file LICENSE" NA
## cowplot "GPL-2" NA
## crayon "MIT + file LICENSE" NA
## crosstalk "MIT + file LICENSE" NA
## curl "MIT + file LICENSE" NA
## data.table "GPL-3 | file LICENSE" NA
## DBI "LGPL (>= 2)" NA
## dbplyr "MIT + file LICENSE" NA
## deldir "GPL (>= 2)" NA
## desc "MIT + file LICENSE" NA
## devtools "GPL (>= 2)" NA
## doParallel "GPL-2" NA
## dplyr "MIT + file LICENSE" NA
## DT "GPL-3 | file LICENSE" NA
## e1071 "GPL-2" NA
## edgeR "GPL (>=2)" NA
## ellipse "GPL (>= 2)" NA
## EMT "GPL" NA
## evaluate "MIT + file LICENSE" NA
## expm "GPL (>= 2)" NA
## FactoMineR "GPL (>= 2)" NA
## fastmatch "GPL-2" NA
## flashClust "GPL (>= 2)" NA
## forcats "GPL-3" NA
## foreach "Apache License (== 2.0)" NA
## futile.logger "LGPL-3" NA
## futile.options "LGPL-3" NA
## gdata "GPL-2" NA
## gdsfmt "LGPL-3" NA
## ggplot2 "GPL-2 | file LICENSE" NA
## ggvis "GPL-2 | file LICENSE" NA
## git2r "GPL-2" NA
## glue "MIT + file LICENSE" NA
## gmodels "GPL-2" NA
## gplots "GPL-2" NA
## gridBase "GPL" NA
## gridExtra "GPL (>= 2)" NA
## gtools "GPL-2" NA
## haven "MIT + file LICENSE" NA
## hexbin "GPL-2" NA
## highr "GPL" NA
## hms "GPL-3" NA
## htmltools "GPL (>= 2)" NA
## htmlwidgets "MIT + file LICENSE" NA
## httpuv "GPL-3 | file LICENSE" NA
## httr "MIT + file LICENSE" NA
## hunspell "GPL-2 | LGPL-2.1 | MPL-1.1" NA
## igraph "GPL (>= 2)" NA
## IRanges "Artistic-2.0" NA
## irlba "GPL-3" NA
## iterators "Apache License (== 2.0)" NA
## jsonlite "MIT + file LICENSE" NA
## knitr "GPL" NA
## lambda.r "LGPL-3" NA
## lazyeval "GPL-3" NA
## leaflet "GPL-3" NA
## leaps "GPL (>= 2)" NA
## LearnBayes "GPL (>= 2)" NA
## limma "GPL (>=2)" NA
## lme4 "GPL (>= 2)" NA
## lmtest "GPL-2 | GPL-3" NA
## loa "GPL (>= 2)" NA
## locfit "GPL (>= 2)" NA
## lubridate "GPL-2" NA
## magrittr "MIT + file LICENSE" NA
## maptools "GPL (>= 2)" NA
## markdown "GPL-2" NA
## MatrixModels "GPL (>= 2)" NA
## memoise "MIT + file LICENSE" NA
## mime "GPL" NA
## minqa "GPL-2" NA
## mnormt "GPL-2 | GPL-3" NA
## modelr "GPL-3" NA
## myp "GPL-2" NA
## nloptr "LGPL-3" NA
## NMF "GPL (>= 2)" NA
## nortest "GPL (>= 2)" NA
## openssl "MIT + file LICENSE" NA
## packrat "GPL-2" NA
## pbkrtest "GPL (>= 2)" NA
## PBSmapping "GPL (>= 2)" NA
## pegas "GPL (>= 2)" NA
## permute "GPL-2" NA
## phangorn "GPL (>= 2)" NA
## pkgconfig "MIT + file LICENSE" NA
## pkgmaker "GPL (>= 2)" NA
## PKI "GPL-2 | GPL-3 | file LICENSE" NA
## plogr "MIT + file LICENSE" NA
## plyr "MIT + file LICENSE" NA
## png "GPL-2 | GPL-3" NA
## polysat "GPL-2" NA
## poppr "GPL-2 | GPL-3" NA
## poweRlaw "GPL-2 | GPL-3" NA
## praise "MIT + file LICENSE" NA
## psych "GPL (>= 2)" NA
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## pvclust "GPL (>= 2)" NA
## quadprog "GPL (>= 2)" NA
## quantreg "GPL (>= 2)" NA
## R6 "MIT + file LICENSE" NA
## raster "GPL (>= 3)" NA
## Rcpp "GPL (>= 2)" NA
## RcppEigen "GPL (>= 2) | file LICENSE" NA
## RCurl "BSD" NA
## readr "GPL (>= 2) | file LICENSE" NA
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## registry "GPL-2" NA
## rematch "MIT + file LICENSE" NA
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## rex "MIT + file LICENSE" NA
## RgoogleMaps "GPL" NA
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## RJSONIO "BSD_3_clause + file LICENSE" NA
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## S4Vectors "Artistic-2.0" NA
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## segmented "GPL" NA
## selectr "BSD_3_clause + file LICENCE" NA
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## sourcetools "MIT + file LICENSE" NA
## sp "GPL (>= 2)" NA
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## stringi "file LICENSE" "yes"
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## testthat "MIT + file LICENSE" NA
## tibble "MIT + file LICENSE" NA
## tidyr "MIT + file LICENSE" NA
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## tidyverse "GPL-3 | file LICENSE" NA
## tripack "ACM | file LICENSE" NA
## tufte "GPL-3" NA
## vcd "GPL-2" NA
## vegan "GPL-2" NA
## VennDiagram "GPL-2" NA
## VGAM "GPL-3" NA
## vioplot "BSD" NA
## viridis "MIT + file LICENSE" NA
## viridisLite "MIT + file LICENSE" NA
## whisker "GPL-3" NA
## withr "GPL (>= 2)" NA
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## yaml "BSD_3_clause + file LICENSE" NA
## zlibbioc "Artistic-2.0 + file LICENSE" NA
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## abind "LGPL (>= 2)" NA
## colorspace "BSD_3_clause + file LICENSE" NA
## crayon "MIT + file LICENSE" NA
## dichromat "GPL-2" NA
## digest "GPL-2" NA
## doMC "GPL-2" NA
## foreach "Apache License (== 2.0)" NA
## ggplot2 "GPL-2" NA
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## iterators "Apache License (== 2.0)" NA
## labeling "MIT + file LICENSE | Unlimited" NA
## littler "GPL (>= 2)" NA
## magrittr "MIT + file LICENSE" NA
## mapproj "Lucent Public License" NA
## maps "GPL-2" NA
## memoise "MIT + file LICENSE" NA
## multicore "GPL-2" NA
## munsell "MIT + file LICENSE" NA
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## plyr "MIT + file LICENSE" NA
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## hunspell NA NA NA "yes"
## igraph NA NA NA "yes"
## IRanges NA NA NA "yes"
## irlba NA NA NA "yes"
## iterators NA NA NA "no"
## jsonlite NA NA NA "yes"
## knitr NA NA NA "no"
## lambda.r NA NA NA "no"
## lazyeval NA NA NA "yes"
## leaflet NA NA NA "no"
## leaps NA NA NA "yes"
## LearnBayes NA NA NA "no"
## limma NA NA NA "yes"
## lme4 NA NA NA "yes"
## lmtest NA NA NA "yes"
## loa NA NA NA "no"
## locfit NA NA NA "yes"
## lubridate NA NA NA "yes"
## magrittr NA NA NA "no"
## maptools NA NA NA "yes"
## markdown NA NA NA "yes"
## MatrixModels NA NA NA "no"
## memoise NA NA NA "no"
## mime NA NA NA "yes"
## minqa NA NA NA "yes"
## mnormt NA NA NA "yes"
## modelr NA NA NA "no"
## myp NA NA NA NA
## nloptr NA NA NA "yes"
## NMF NA NA NA "yes"
## nortest NA NA NA "no"
## openssl NA NA NA "yes"
## packrat NA NA NA "no"
## pbkrtest NA NA NA "no"
## PBSmapping NA NA NA "yes"
## pegas NA NA NA "yes"
## permute NA NA NA "no"
## phangorn NA NA NA "yes"
## pkgconfig NA NA NA "no"
## pkgmaker NA NA NA "no"
## PKI NA NA NA "yes"
## plogr NA NA NA "no"
## plyr NA NA NA "yes"
## png NA NA NA "yes"
## polysat NA NA NA "no"
## poppr NA NA NA "yes"
## poweRlaw NA NA NA "no"
## praise NA NA NA "no"
## psych NA NA NA "no"
## purrr NA NA NA "yes"
## pvclust NA NA NA "no"
## quadprog NA NA NA "yes"
## quantreg NA NA NA "yes"
## R6 NA NA NA "no"
## raster NA NA NA "yes"
## Rcpp NA NA NA "yes"
## RcppEigen NA NA NA "yes"
## RCurl NA NA NA "yes"
## readr NA NA NA "yes"
## readxl NA NA NA "yes"
## registry NA NA NA "no"
## rematch NA NA NA "no"
## reprex NA NA NA "no"
## rex NA NA NA "no"
## RgoogleMaps NA NA NA "no"
## rJava NA NA NA "yes"
## RJSONIO NA NA NA "yes"
## rlang NA NA NA "yes"
## rmarkdown NA NA NA "no"
## RMThreshold NA NA NA "no"
## rngtools NA NA NA "no"
## rprojroot NA NA NA "no"
## rsconnect NA NA NA "no"
## rstudioapi NA NA NA "no"
## rvest NA NA NA "no"
## S4Vectors NA NA NA "yes"
## scales NA NA NA "yes"
## scatterplot3d NA NA NA "no"
## segmented NA NA NA "no"
## selectr NA NA NA "no"
## seqinr NA NA NA "yes"
## shiny NA NA NA "no"
## shinythemes NA NA NA "no"
## sm NA NA NA "yes"
## SNPRelate NA NA NA "yes"
## snpStats NA NA NA "yes"
## sourcetools NA NA NA "yes"
## sp NA NA NA "yes"
## SparseM NA NA NA "yes"
## spdep NA NA NA "yes"
## splancs NA NA NA "yes"
## stringdist NA NA NA "yes"
## stringi NA NA NA "yes"
## stringr NA NA NA "no"
## testthat NA NA NA "yes"
## tibble NA NA NA "yes"
## tidyr NA NA NA "yes"
## tidyselect NA NA NA "yes"
## tidyverse NA NA NA "no"
## tripack "yes" NA NA "yes"
## tufte NA NA NA "no"
## vcd NA NA NA "no"
## vegan NA NA NA "yes"
## VennDiagram NA NA NA "no"
## VGAM NA NA NA "yes"
## vioplot NA NA NA NA
## viridis NA NA NA "no"
## viridisLite NA NA NA "no"
## whisker NA NA NA "no"
## withr NA NA NA "no"
## WriteXLS NA NA NA "no"
## XML NA NA NA "yes"
## xml2 NA NA NA "yes"
## xtable NA NA NA "no"
## XVector NA NA NA "yes"
## yaml NA NA NA "yes"
## zlibbioc NA NA NA "yes"
## zoo NA NA NA "yes"
## abind NA NA NA "no"
## colorspace NA NA NA "yes"
## crayon NA NA NA "no"
## dichromat NA NA NA NA
## digest NA NA NA "yes"
## doMC NA "unix" NA "no"
## foreach NA NA NA "no"
## ggplot2 NA NA NA "no"
## gtable NA NA NA NA
## iterators NA NA NA "no"
## labeling NA NA NA "no"
## littler NA "unix" NA "yes"
## magrittr NA NA NA "no"
## mapproj NA NA NA "yes"
## maps NA NA NA "yes"
## memoise NA NA NA "no"
## multicore NA "unix" NA "no"
## munsell NA NA NA "no"
## pkgKitten NA NA NA "no"
## plyr NA NA NA "yes"
## proto NA NA NA NA
## RColorBrewer NA NA NA "no"
## Rcpp NA NA NA "yes"
## reshape2 NA NA NA "yes"
## rkward NA NA NA NA
## rkwardtests NA NA NA NA
## scales NA NA NA "yes"
## sp NA NA NA "yes"
## stringi NA NA NA "yes"
## stringr NA NA NA "no"
## base NA NA NA NA
## boot NA NA NA "no"
## class NA NA NA "yes"
## cluster NA NA NA "yes"
## codetools NA NA NA "no"
## compiler NA NA NA NA
## datasets NA NA NA NA
## foreign NA NA NA "yes"
## graphics NA NA NA "yes"
## grDevices NA NA NA "yes"
## grid NA NA NA "yes"
## KernSmooth NA NA NA "yes"
## lattice NA NA NA "yes"
## MASS NA NA NA "yes"
## Matrix NA NA NA "yes"
## methods NA NA NA "yes"
## mgcv NA NA NA "yes"
## nlme NA NA NA "yes"
## nnet NA NA NA "yes"
## parallel NA NA NA "yes"
## rpart NA NA NA "yes"
## spatial NA NA NA "yes"
## splines NA NA NA "yes"
## stats NA NA NA "yes"
## stats4 NA NA NA NA
## survival NA NA NA "yes"
## tcltk NA NA NA "yes"
## tools NA NA NA "yes"
## utils NA NA NA "yes"
## Built
## ade4 "3.4.2"
## adegenet "3.4.0"
## akima "3.4.2"
## ape "3.4.2"
## assertthat "3.4.0"
## backports "3.4.2"
## base64enc "3.4.0"
## BH "3.4.2"
## bibtex "3.4.0"
## bindr "3.4.2"
## bindrcpp "3.4.2"
## BiocGenerics "3.4.2"
## BiocInstaller "3.4.2"
## Biostrings "3.4.2"
## bitops "3.4.0"
## brew "3.4.2"
## broom "3.4.2"
## callr "3.4.2"
## car "3.4.2"
## caTools "3.4.0"
## CCP "3.4.1"
## cellranger "3.4.2"
## cli "3.4.2"
## clipr "3.4.2"
## coda "3.4.0"
## commonmark "3.4.2"
## cowplot "3.4.2"
## crayon "3.4.2"
## crosstalk "3.4.0"
## curl "3.4.2"
## data.table "3.4.2"
## DBI "3.4.2"
## dbplyr "3.4.2"
## deldir "3.4.0"
## desc "3.4.2"
## devtools "3.4.2"
## doParallel "3.4.2"
## dplyr "3.4.2"
## DT "3.4.2"
## e1071 "3.4.2"
## edgeR "3.4.2"
## ellipse "3.4.2"
## EMT "3.4.1"
## evaluate "3.4.0"
## expm "3.4.0"
## FactoMineR "3.4.2"
## fastmatch "3.4.0"
## flashClust "3.4.2"
## forcats "3.4.2"
## foreach "3.4.0"
## futile.logger "3.4.0"
## futile.options "3.4.0"
## gdata "3.4.2"
## gdsfmt "3.4.2"
## ggplot2 "3.4.0"
## ggvis "3.4.2"
## git2r "3.4.2"
## glue "3.4.2"
## gmodels "3.4.0"
## gplots "3.4.2"
## gridBase "3.4.0"
## gridExtra "3.4.2"
## gtools "3.4.0"
## haven "3.4.2"
## hexbin "3.4.2"
## highr "3.4.0"
## hms "3.4.2"
## htmltools "3.4.0"
## htmlwidgets "3.4.2"
## httpuv "3.4.2"
## httr "3.4.2"
## hunspell "3.4.2"
## igraph "3.4.2"
## IRanges "3.4.2"
## irlba "3.4.2"
## iterators "3.4.0"
## jsonlite "3.4.2"
## knitr "3.4.0"
## lambda.r "3.4.2"
## lazyeval "3.4.2"
## leaflet "3.4.0"
## leaps "3.4.2"
## LearnBayes "3.4.0"
## limma "3.4.2"
## lme4 "3.4.2"
## lmtest "3.4.2"
## loa "3.4.0"
## locfit "3.4.2"
## lubridate "3.4.0"
## magrittr "3.4.0"
## maptools "3.4.0"
## markdown "3.4.0"
## MatrixModels "3.4.2"
## memoise "3.4.2"
## mime "3.4.0"
## minqa "3.4.2"
## mnormt "3.4.2"
## modelr "3.4.2"
## myp "3.4.2"
## nloptr "3.4.2"
## NMF "3.4.0"
## nortest "3.4.2"
## openssl "3.4.2"
## packrat "3.4.2"
## pbkrtest "3.4.2"
## PBSmapping "3.4.2"
## pegas "3.4.0"
## permute "3.4.0"
## phangorn "3.4.2"
## pkgconfig "3.4.2"
## pkgmaker "3.4.0"
## PKI "3.4.2"
## plogr "3.4.2"
## plyr "3.4.0"
## png "3.4.0"
## polysat "3.4.2"
## poppr "3.4.0"
## poweRlaw "3.4.2"
## praise "3.4.0"
## psych "3.4.2"
## purrr "3.4.2"
## pvclust "3.4.2"
## quadprog "3.4.0"
## quantreg "3.4.2"
## R6 "3.4.2"
## raster "3.4.0"
## Rcpp "3.4.2"
## RcppEigen "3.4.2"
## RCurl "3.4.2"
## readr "3.4.2"
## readxl "3.4.2"
## registry "3.4.0"
## rematch "3.4.2"
## reprex "3.4.2"
## rex "3.4.2"
## RgoogleMaps "3.4.0"
## rJava "3.4.2"
## RJSONIO "3.4.0"
## rlang "3.4.2"
## rmarkdown "3.4.2"
## RMThreshold "3.4.1"
## rngtools "3.4.0"
## rprojroot "3.4.0"
## rsconnect "3.4.2"
## rstudioapi "3.4.2"
## rvest "3.4.2"
## S4Vectors "3.4.2"
## scales "3.4.2"
## scatterplot3d "3.4.2"
## segmented "3.4.2"
## selectr "3.4.2"
## seqinr "3.4.2"
## shiny "3.4.2"
## shinythemes "3.4.2"
## sm "3.4.2"
## SNPRelate "3.4.2"
## snpStats "3.4.2"
## sourcetools "3.4.0"
## sp "3.4.2"
## SparseM "3.4.2"
## spdep "3.4.2"
## splancs "3.4.2"
## stringdist "3.4.2"
## stringi "3.4.2"
## stringr "3.4.0"
## testthat "3.4.0"
## tibble "3.4.2"
## tidyr "3.4.2"
## tidyselect "3.4.2"
## tidyverse "3.4.2"
## tripack "3.4.2"
## tufte "3.4.2"
## vcd "3.4.2"
## vegan "3.4.2"
## VennDiagram "3.4.0"
## VGAM "3.4.2"
## vioplot "3.4.2"
## viridis "3.4.0"
## viridisLite "3.4.0"
## whisker "3.4.2"
## withr "3.4.2"
## WriteXLS "3.4.2"
## XML "3.4.2"
## xml2 "3.4.2"
## xtable "3.4.0"
## XVector "3.4.2"
## yaml "3.4.0"
## zlibbioc "3.4.2"
## zoo "3.4.2"
## abind "3.2.0"
## colorspace "3.1.0"
## crayon "3.2.2"
## dichromat "3.1.1"
## digest "3.2.3"
## doMC "3.2.2"
## foreach "3.2.2"
## ggplot2 "3.2.3"
## gtable "3.0.0"
## iterators "3.2.2"
## labeling "3.1.1"
## littler "3.3.2"
## magrittr "3.2.1"
## mapproj "3.2.2"
## maps "3.2.3"
## memoise "3.1.0"
## multicore "3.1.0"
## munsell "3.0.2"
## pkgKitten "3.2.1"
## plyr "3.2.1"
## proto "3.0.0"
## RColorBrewer "3.1.2"
## Rcpp "3.2.3"
## reshape2 "3.1.0"
## rkward "3.2.3"
## rkwardtests "3.2.3"
## scales "3.2.3"
## sp "3.1.0"
## stringi "3.2.2"
## stringr "3.2.2"
## base "3.4.2"
## boot "3.4.1"
## class "3.4.0"
## cluster "3.4.0"
## codetools "3.3.1"
## compiler "3.4.2"
## datasets "3.4.2"
## foreign "3.4.0"
## graphics "3.4.2"
## grDevices "3.4.2"
## grid "3.4.2"
## KernSmooth "3.4.0"
## lattice "3.3.3"
## MASS "3.4.0"
## Matrix "3.4.1"
## methods "3.4.2"
## mgcv "3.4.1"
## nlme "3.4.0"
## nnet "3.4.0"
## parallel "3.4.2"
## rpart "3.4.0"
## spatial "3.2.2"
## splines "3.4.2"
## stats "3.4.2"
## stats4 "3.4.2"
## survival "3.4.0"
## tcltk "3.4.2"
## tools "3.4.2"
## utils "3.4.2"